Continuous population models (Murray, 1.1 to 1.6)
Discrete population models for a single species (Murray, chapter 2)
Continuous models for interacting populations (Murray, 3.1 to3.5)

Introduction to Numerical Methods
The role of higher predation in plankton population models (Edwards and Yool., 2000)
Generic dynamics of a simple plankton population model (Edwards and Bees, 2001)

Nitrogen Phytoplankton Zooplankton Detritus (NPZD) model (Franks et al., 2002)
Stability analysis of NPZD models (Franks et al., 2002)
Iron limitation with NPZD-Fe (Fiechter et al., 2009)
NPZD with Carbon Cycle (TBD)

The Deep Chlorophyll Maxima (Hodges et al., 2004)

Overview of large-scale ocean circulation: Wind-driven circulation, Sverdrup balance, Stommel gyre, thermohaline circulation, mixing, geostrophy, circulation of passive and active tracers, interannual variability (Chapter 2, Sarmiento and Gruber; and Chapter 2, Fasham's monography)

Tracer conservation equation for passive tracers (Combes et al., 2007)
Lagrangian transport equation (Schlag et al., 2008, LTRANS)

Recycling and export systems. Costal upwelling systems: the California current, the Humboldt current and the Benguela current. Monsoonal systems. The Arctic shelfs. Semi-enclosed marginal seas. (Chapter 3, Fasham's monography - review article by Williams and Follows)

Open Ocean Equatorial Upwelling System (TBD)
Eastern Boundary Upwelling Ecosystem (Gruber et al., 2006)
Western Boundary Margin Ecosystem (Fennel et al., 2006)

Regional Ocean Modeling System (ROMS) NPZD (Gruber et al., 2006)
Darwinian Ecosystem Models (Follows et al., 2007)
Individual Based Models (IBMs) (North et al., 2008)
Bayesian Hierarchical Ecosystem Models (BHMs) (Wikle et al. 2007; TBD)
Ecopath with Ecosym, ecosystem modeling and management (www.ecopath.org)